The bioluminescent jellyfish Aequorea victoria is the source of green fluorescent protein (GFP) Credit: Sierra Blakely, Wikimedia Commons
My research team, which is funded by the National Science Foundation (NSF), explores bioluminescence—the biological production of light by natural chemical reactions. Specifically we focus on the evolutionary origins of bioluminescence in Motyxia, the only millipede genus in California that is bioluminescent.
Interestingly, Motyxia are blind, and so their visual signaling can only be seen by members of other species, such as predators. In addition, Motyxia produce hydrogen cyanide, an extremely poisonous gas as a chemical defense. Some of our research indicates that Motyxia’s bioluminescence serves as a warning signal to deter nocturnal mammals from eating these highly poisonous millipedes.
By helping to reveal the evolutionary origins of bioluminescence, we can better understand and investigate how other complex traits arise in nature. In addition, bioluminescence research has a history of offering many proven and potential societal benefits in fields ranging from national defense to medicine. Some examples:
- Bioluminescence is also called “cold light” because the biochemical reaction that generates bioluminescent light is typically more than 90 percent efficient, meaning that only 10 percent of bioluminescent chemical energy is wasted as heat. By contrast, incandescent light bulbs are only 10 percent efficient! We could enhance the efficiency of our lighting systems by designing them to mimic natural bioluminescent reactions.
- The bioluminescent underbelly of the marine bobtail squid blends with background light from the water’s surface and so decreases the squid’s vulnerability to attack from predators dwelling below it. This natural camouflage offers the potential to inspire luminescent (glow in the dark) hulls for warships. The U.S. Navy is currently studying marine animals that use bioluminescence.
- All humans spontaneously release ultra-weak photon emissions and generate light through processes that are similar to bioluminescence in other animals. However, cancerous cells emit more light than do normal cells. This difference suggests that human luminescence may be used as a clinical tool to help diagnose illness and pinpoint the exact locations of cancerous cells.
- NSF-funded biologist Osamu Shimomura wanted to know what caused the jellyfish Aequorea victoria to glow green. One protein he found in the jellyfish, called green fluorescent protein (GFP), has revolutionized how scientists study cells. GFP is now widely used in biological and biomedical research as a fluorescent tag to help researchers track specific biological activities, such as the spread of cancer, the production of insulin and the movement of HIV proteins. And in 2008, Shimomura along with Drs. Martin Chalfie and Roger Tsien received the Nobel Prize in Chemistry for the discovery and development of GFP.
- The enzyme that is responsible for bioluminescence in beetles is used by researchers to carry out next-generation pyrosequencing—a fast, inexpensive method for sequencing genomes. In 2008, pyrosequencing was, for the first time, used to sequence the full genome of an individual human; the human was Dr. James Watson—the co-discoverer of DNA. Also, in 2008, pyrosequencing was used to sequence the complete genome of a Neanderthal.
- Enzymes responsible for bioluminescence are used by researchers to detect ATP (adenosine triphosphate), which is an essential substance for living cells.
- A version of a light-emitting compound from the seed shrimp Vargula (a small bioluminescent crustacean) is used by researchers to measure superoxide anions, which are a critically important component of metabolic systems that are difficult to detect in nature.
- Many types of physiological processes trigger changes in concentrations of intracellular calcium ions—an essential component of biological processes. One way to track intracellular calcium concentrations is to insert into cells a type of photoprotein known as aequorin, which is derived from the bioluminescent jellyfish A. victoria. Aequorin is highly sensitive and specific to calcium and—most importantly—emits light when it reacts and thereby signals calcium concentrations. In addition, it is non-toxic to most cells.
- Other photoproteins derived from diverse animals might be used someday to help understand other complex but fundamentally important biological dynamics. For example, Beroe, a comb jelly and Thalassicolla, a radiolarian, might also be used to help detect calcium ions, and Harmothoe, a scaleworm, might be used to detect iron ions.
Next time you’re up late and it’s dark outside (even better right after a summer rain), visit your local natural area—a moist gully or streamside are the best. Turn off your flashlight and allow your eyes become adjusted to the light. Blue ghosts, railroad-worms, luminous millipedes, and snail-eating firefly larvae are some of the bioluminescent organisms you might see. When you observe these fascinating organisms, consider how they emit light and why their ability to bioluminesce evolved. But importantly, just take a moment to quietly observe the nightlife and nature’s living light.
Note: In 1961, scientists O. Shimomura and F.H. Johnson initially found that the protein aequorin was responsible for A. victoria’s light. When they purified the protein, they observed blue light. In contrast, A. victoria glows green in nature. So how does the light change from blue to green? Later, Shimomura and colleagues found that the jellyfish’s bioluminescence is generated by Förster-type resonant energy transfer of aequorin’s blue light to GFP. While GFP is not bioluminescent itself, it’s the ultimate emitter of the green light by this energy transfer. Energy transfer from a photoprotein to a fluorescent agent is common in bioluminescent marine animals, and is likely also the mechanism by which bioluminescent millipedes glow.
I am fascinated by photophores and bioluminescence. I’ve been trying to find if bioluminescence is a possible field of scientific study and research, if it is not what area of study is the closest? What particular schools would b receptive to this relatively new area of study?
Hi Aaron – I suggest considering bioluminescence from one of three disciplines: marine biology, biology (or entomology), or engineering. Basic research on bioluminescence is typically conducted in biology/entomology and marine biology departments. (The ocean is astoundingly rich in bioluminescent organisms!) Engineering departments are keen on biomimicry, which is the study of natural systems to solve technological problems. The study of how light is scattered, reflected, refracted, and generated by biological means is called biophotonics. It’s a wonderful interdisciplinary field that explores, for example, light scattering by butterfly wings and the iridescence of beetle cuticles (those interested in biophotonics are typically in engineering or optical sciences departments). Here are a couple of very successful lab groups who study bioluminescence: (1) Steve Haddock and James Case at UCSB [http://biolum.eemb.ucsb.edu/], (2) Sonke Johnsen at Duke [http://sites.biology.duke.edu/johnsenlab/], (3) David Gruber at CUNY [http://sites.biology.duke.edu/johnsenlab/], (3) Edith Widder at ORCA [http://www.teamorca.org/cfiles/about_edie.cfm], (4) Yuichi Oba at Nagoya University [https://www.agr.nagoya-u.ac.jp/english/organization/dept3-1.html], (5) Sara Lewis at Tufts [http://ase.tufts.edu/biology/faculty/lewis/], and (6) Vadim Viviani in Brazil [http://www.photobiology.info/Viviani.html]
Extraodinary Marek! Your work is not only illuminating but is a conductor of light upon the study of evolution. Only the latter of which is true for my good friend Dr. Watson.
As my old friend Mr. Charles Darwin would say – Floreat Entomologica!
From the highlands of the Sierra (formerly 221 Baker St.)
Thank you good sir, for your nice compliments! I have a friend in the highlands of the Sierra. He is as cool as the name of the town in which he lives near.
All the best and, yes, Floreat Entomologica!
…and all the best to you my friend.
Awaiting the great dipper el nino of 2015,
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Hi I live in centeral Alberta. I found a root this summer (probably poplar) that faintly glows with white light. Just wondering what causes it. Is it a fungus or something?
Hi John, that sounds like a neat discovery. I suspect the glow is caused by a fungus, perhaps Armillaria mellea (commonly known as honey fungus). The bioluminescence, which is caused by a natural chemical enzymatic reaction catalyzed by luciferase, originates in the undergound fungal mycelia. The above-ground mushrooms are not bioluminescent. Armillaria is also among the largest of organisms and one individual in Michigan was estimated to cover 15 hectares, weigh 9700 kg, and as old as 1500 years! For more details about fungal luminescence check out the following links: https://en.wikipedia.org/wiki/Armillaria_mellea and http://pubs.rsc.org/en/Content/ArticleLanding/2008/PP/b713328f#!divAbstract